PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001102G0050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 358aa    MW: 39585.2 Da    PI: 4.741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001102G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19110160256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++G+r+++ +g+W+AeIrdp++     r++lg+f++aeeAa+a++a +++++ge
  PH01001102G0050 110 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFDSAEEAARAYDAEALRIRGE 160
                      69*******.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.52E-33110168No hitNo description
Gene3DG3DSA:3.30.730.102.5E-31110169IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22110169IPR016177DNA-binding domain
PROSITE profilePS5103224.408110167IPR001471AP2/ERF domain
SMARTSM003804.2E-37110173IPR001471AP2/ERF domain
PfamPF008471.2E-12111160IPR001471AP2/ERF domain
PRINTSPR003678.1E-11111122IPR001471AP2/ERF domain
PRINTSPR003678.1E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MCGGAVLSDI ITPARRATDG HLRPEKKKQR RAGAGKGRRL RRGRTEGKED FAADFEEFEE  60
SGELEVELSD DEVKPFTALR SGFARDGLNA TAAGVDGPAA RLAKRKRKNQ FRGIRRRPWG  120
KWAAEIRDPR KGVRVWLGTF DSAEEAARAY DAEALRIRGE KAKVNFPDEA PMSSQKHRAE  180
PTSVAVPKFN TEEMPTIKPA ANNMANTNVY SYPVVDYSLH EPFVETQNMS FVPSMNAVKD  240
PFMNLSSDQG SNSSCSDFSW ENETKTPDIT SVLAPIPTLT EVDESAFLQN NASNAMVPPV  300
MGNASVDLTD LEPYMKFLMD GGSDESADTL LSCEESQDVV SNMDLWSFDD MPMSVGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19110167563ATERF1
3gcc_A1e-19110167563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103117KRKRKNQFRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1013730.0FP101373.1 Phyllostachys edulis cDNA clone: bphyem204e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.11e-170PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-129ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0E0A6771e-171A0A0E0A677_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g09390.11e-170(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-26related to AP2 12